Builds the adjacency list information by parsing the given image
along the skeleton.
Performs a search for the BMAT by testing for
maximal radius bitangent circles that have no
part outside of the object.
Copies the given image into a new image, and performs the distance
map operation on the new image.
A toggle whether to include the original image in the eyecandy presentation image or not.
A toggle whether to include the lighting correction surface in the eye candy.
Parses the given image for nodes.
Computes the envelope of the Blum medial axis maximal discs.
Computes the pruned skeleton onto a newly created image.
Traces the ridges of a given distance map.
Segments the image via the following process:
1) Find Edges - a standard call is performed
This creates a lot of noise in the background
and within the vasculature.
"Grows" the low threshold into the high threshold.
Performs the Skeletonization (thinning) algorithm on the distance
map ridge skeleton.
Performs the thinning algorithm on the
segmented image.
Performs the fancy pants Voronoi/Delaunay algorithm stuff
that Paul Chew, chew@cs.cornell.edu wrote.
Looks at the 5x5 area centered on the given pixel.
Looks at the 7x7 area centered on the given pixel.
A standard accessor to the adjacency list variable.
Returns the number of nodes in the adjacency list.
Accessor to the linked node after this one.
Extracts and returns the alpha transparency channel from a 4 byte ARGB color.
Accessor to the linked node before this one.
Extracts and returns the blue color channel from a 4 byte ARGB color.
Accessor for color variable.
Returns the color of an 8-neighbor to the given coordinate pixel.
Grabs the grayscale color of the pixel requested from the local
member pixel array.
Analyzes the histograph for the most common colors.
Searches the pixel[][] array for the darkest (smallest) non-BLACK (assumed 0) color.
Gets the width and heigh information of the given image.
Calculates the area of a 4-connected enclosed mesh.
Initializes the plug-in by storing it's imageplus information.
Extracts and returns the green color channel from a 4 byte ARGB color.
Returns the high (overestimate) threshold.
Performs a least-squares regression.
Looks at the 8-neighborhood of a pixel.
Attempts to load the local settings information from the text file 'settings.txt' in the given folder.
Calculates and returns a low (underestimate) threshold.
Accessor to the node variable.
Accessor for radius variable.
Extracts and returns the red color channel from a 4 byte ARGB color.
Looks at the 8-neighborhood of a pixel.
The integer value ImageJ associates with the middle grayscale color value gray.
This class implements a class of pixels with basic statistical functions.
The integer ARGB color value ImageJ associates with the color GREEN.