Package vnt

Class Summary

Basic_Segment Plug-in for ImageJ that attempts to automatically segment vascular cells from the background.
Batch_File Processes an image with the VNT.
Batch_Folder Batch processes an entire folder of images.
Compile_All This program quickly compiles all the known VNT plugins quickly.
Coordinate A class that holds the X,Y, and grayscale color value of a pixel.
Create_Settings This plugin presents a dialog which creates/edits a settings.txt file.
Debug_tool A simple tool that displays the selected rectangular ROI's pixel values.
DistanceMap_Outline Generates an approximate outline of the vessels from a distance map skeleton (a skeleton that is grayscale, retaining distance map information along the skeleton).
DistanceMap_Skeleton Uses ImageJ to generate a Distance Map for a segmented image.
Endpoint_Prune Plug-in for ImageJ that takes a grayscale distance map skeleton image and generates a pruned skeleton.
Eye_Candy A simple class that opens the original color image and overlays graphics generated by the Vascular Network Toolkit.
FindEdges_Segment Plug-in for ImageJ that attempts to automatically perform specific segmentation designed for vascular cells grown on a Matrigel assay by Dr.
Lighting_Correction This plug-in is meant to be used for images with a no-reducing lense.
Node A class that holds the circular (X,Y) coordinate center, radius data, and adjacency list information.
Node_Analysis Multi-purpose class for final analysis.
Node_LinkedList A standard doubly-linked list.
Template_Plugin Generic example of how to write a plugin for ImageJ.
VascularNetworkToolkit Holds a variety of commonly used methods for all plug-ins under this toolkit for ImageJ.